HL_5D8B_105

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5D8B|1|VC|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_105 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1218

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

5D8B|1|VC|U|2528
5D8B|1|VC|G|2529
5D8B|1|VC|A|2530
5D8B|1|VC|A|2531
5D8B|1|VC|G|2532
5D8B|1|VC|A|2533
5D8B|1|VC|A|2534
5D8B|1|VC|G|2535

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6