HL_5D8B_109

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_109 not in the Motif Atlas

Homologous match to HL_7RQB_065

Geometric discrepancy: 0.1023

The information below is about HL_7RQB_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53171.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

18

Unit IDs

5D8B|1|VC|C|2701
5D8B|1|VC|U|2702
5D8B|1|VC|C|2703
5D8B|1|VC|C|2704
5D8B|1|VC|A|2705
5D8B|1|VC|G|2706

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17