HL_5D8B_124

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

5D8B|1|YC|U|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_124 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.318

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

5D8B|1|YC|G|200
5D8B|1|YC|C|201
5D8B|1|YC|U|208
5D8B|1|YC|U|209
5D8B|1|YC|U|210
5D8B|1|YC|G|216
5D8B|1|YC|C|217

Current chains

Chain YC

16S ribosomal RNA

Nearby chains