HL_5D8B_136
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 5D8B|1|YC|U|793
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_136 not in the Motif Atlas
- Homologous match to HL_6CZR_088
- Geometric discrepancy: 0.1213
- The information below is about HL_6CZR_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
5D8B|1|YC|G|786
5D8B|1|YC|A|787
5D8B|1|YC|U|788
5D8B|1|YC|U|789
5D8B|1|YC|A|790
5D8B|1|YC|G|791
5D8B|1|YC|A|792
5D8B|1|YC|U|793
5D8B|1|YC|A|794
5D8B|1|YC|C|795
5D8B|1|YC|C|796
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain FD
- Transfer RNA; tRNA
- Chain HC
- 30S ribosomal protein S11
- Chain HD
- mRNA
- Chain ZC
- Large subunit ribosomal RNA; LSU rRNA
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