HL_5D8B_145

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5D8B|1|YC|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_145 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2593

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5D8B|1|YC|G|1134
5D8B|1|YC|U|1135
5D8B|1|YC|U|1136
5D8B|1|YC|C|1137
5D8B|1|YC|G|1138
5D8B|1|YC|G|1139
5D8B|1|YC|C|1140

Current chains

Chain YC

16S ribosomal RNA

Nearby chains