HL_5D8B_148

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_148 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.1464

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5D8B|1|YC|C|1314
5D8B|1|YC|U|1315
5D8B|1|YC|G|1316
5D8B|1|YC|C|1317
5D8B|1|YC|A|1318
5D8B|1|YC|A|1319
5D8B|1|YC|C|1320
5D8B|1|YC|C|1321
5D8B|1|YC|C|1322
5D8B|1|YC|G|1323

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain JC

30S ribosomal protein S13

Chain KC

30S ribosomal protein S14

Chain PC

30S ribosomal protein S19