HL_5D8B_184

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5D8B|1|ZC|G|1325, 5D8B|1|ZC|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_184 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1055

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5D8B|1|ZC|G|1324
5D8B|1|ZC|G|1325
5D8B|1|ZC|U|1326
5D8B|1|ZC|C|1327
5D8B|1|ZC|G|1328
5D8B|1|ZC|U|1329
5D8B|1|ZC|C|1330

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L17

Chain MB

50S ribosomal protein L22