HL_5D8B_201

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5D8B|1|ZC|A|2030, 5D8B|1|ZC|A|2031, 5D8B|1|ZC|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_201 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1426

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5D8B|1|ZC|G|2027
5D8B|1|ZC|U|2028
5D8B|1|ZC|G|2029
5D8B|1|ZC|A|2030
5D8B|1|ZC|A|2031
5D8B|1|ZC|G|2032
5D8B|1|ZC|A|2033
5D8B|1|ZC|U|2034
5D8B|1|ZC|G|2035
5D8B|1|ZC|C|2036

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L21

Chain UB

50S ribosomal protein L32

Chain XA

50S ribosomal protein L3