HL_5D8B_205

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5D8B|1|ZC|A|2268, 5D8B|1|ZC|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_205 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0994

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5D8B|1|ZC|C|2264
5D8B|1|ZC|U|2265
5D8B|1|ZC|A|2266
5D8B|1|ZC|A|2267
5D8B|1|ZC|A|2268
5D8B|1|ZC|A|2269
5D8B|1|ZC|G|2270
5D8B|1|ZC|G|2271
5D8B|1|ZC|U|2272
5D8B|1|ZC|A|2273
5D8B|1|ZC|A|2274
5D8B|1|ZC|C|2275
5D8B|1|ZC|G|2276

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain GB

50S ribosomal protein L16

Chain QB

50S ribosomal protein L27