HL_5D8B_210

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_210 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1345

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5D8B|1|ZC|C|2404
5D8B|1|ZC|G|2405
5D8B|1|ZC|U|2406
5D8B|1|ZC|G|2407
5D8B|1|ZC|U|2408
5D8B|1|ZC|G|2409
5D8B|1|ZC|G|2410
5D8B|1|ZC|A|2411
5D8B|1|ZC|A|2412
5D8B|1|ZC|G|2413

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain RB

50S ribosomal protein L28