HL_5D8B_223

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_223 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2438

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5D8B|1|UC|G|378
5D8B|1|UC|C|379
5D8B|1|UC|G|380
5D8B|1|UC|C|381
5D8B|1|UC|A|382
5D8B|1|UC|A|383
5D8B|1|UC|G|384
5D8B|1|UC|C|385

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S16