HL_5D8B_247

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

5D8B|1|ZC|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_247 not in the Motif Atlas

Homologous match to HL_9DFE_041

Geometric discrepancy: 0.4039

The information below is about HL_9DFE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5D8B|1|ZC|U|1727
5D8B|1|ZC|G|1728
5D8B|1|ZC|A|1729
5D8B|1|ZC|U|1730
5D8B|1|ZC|G|1731
5D8B|1|ZC|A|1732
5D8B|1|ZC|G|1733

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains