HL_5DAR_003

3D structure

PDB id

5DAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5DAR|1|D|A|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAR_003 not in the Motif Atlas

Homologous match to HL_5D8H_001

Geometric discrepancy: 0.0829

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5DAR|1|D|C|1174
5DAR|1|D|U|1175
5DAR|1|D|U|1176
5DAR|1|D|A|1177
5DAR|1|D|G|1178
5DAR|1|D|A|1179
5DAR|1|D|A|1180
5DAR|1|D|G|1181
5DAR|1|D|C|1182
5DAR|1|D|A|1183
5DAR|1|D|G|1184

Current chains

Chain D

74 nt fragment of 23S rRNA

Nearby chains

Chain F

50S ribosomal protein L11