HL_5DAR_004

3D structure

PDB id

5DAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAR_004 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.0881

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5DAR|1|D|C|1202
5DAR|1|D|G|1203
5DAR|1|D|U|1204
5DAR|1|D|A|1205
5DAR|1|D|A|1206
5DAR|1|D|C|1207
5DAR|1|D|A|1208
5DAR|1|D|G|1209

Current chains

Chain D

74 nt fragment of 23S rRNA

Nearby chains

Chain E

50S ribosomal protein L10