HL_5DAT_027

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5DAT|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.1894

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5DAT|1|1|C|1239
5DAT|1|1|A|1240
5DAT|1|1|U|1241
5DAT|1|1|G|1242
5DAT|1|1|G|1243
5DAT|1|1|A|1244
5DAT|1|1|A|1245
5DAT|1|1|G|1246
5DAT|1|1|U|1247
5DAT|1|1|C|1248
5DAT|1|1|G|1249

Current chains

Chain 1

25S ribosomal RNA

Nearby chains