HL_5DC3_230
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- 5DC3|1|1|C|2539, 5DC3|1|1|A|2540
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DC3_230 not in the Motif Atlas
- Homologous match to HL_8P9A_163
- Geometric discrepancy: 0.3823
- The information below is about HL_8P9A_163
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23509.1
- Basepair signature
- cSH-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DC3|1|1|G|2534
5DC3|1|1|A|2535
5DC3|1|1|A|2536
5DC3|1|1|U|2537
5DC3|1|1|U|2538
5DC3|1|1|C|2539
5DC3|1|1|A|2540
5DC3|1|1|U|2541
5DC3|1|1|U|2542
5DC3|1|1|U|2543
5DC3|1|1|U|2544
5DC3|1|1|C|2545
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L8
- 60S ribosomal protein L8-A
- Chain S1
- 40S ribosomal protein S1-A
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