HL_8P9A_163

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

8P9A|1|AR|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23509.1

Basepair signature

cSH-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8P9A|1|AR|G|2534
8P9A|1|AR|A|2535
8P9A|1|AR|A|2536
8P9A|1|AR|U|2537
8P9A|1|AR|U|2538
8P9A|1|AR|C|2539
8P9A|1|AR|A|2540
8P9A|1|AR|U|2541
8P9A|1|AR|U|2542
8P9A|1|AR|U|2543
8P9A|1|AR|U|2544
8P9A|1|AR|C|2545

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L34-A

Chain s1

40S ribosomal protein S1-A