HL_5DC3_237

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

5DC3|1|6|C|1700, 5DC3|1|6|A|1701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_237 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.2761

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DC3|1|6|A|1691
5DC3|1|6|G|1692
5DC3|1|6|A|1693
5DC3|1|6|A|1694
5DC3|1|6|G|1695
5DC3|1|6|G|1696
5DC3|1|6|G|1697
5DC3|1|6|G|1698
5DC3|1|6|G|1699
5DC3|1|6|C|1700
5DC3|1|6|A|1701
5DC3|1|6|A|1702
5DC3|1|6|C|1703
5DC3|1|6|U|1704
5DC3|1|6|C|1705
5DC3|1|6|C|1706
5DC3|1|6|A|1707
5DC3|1|6|U|1708
5DC3|1|6|C|1709
5DC3|1|6|U|1710

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A