HL_5DFE_021
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5DFE|1|QA|A|968, 5DFE|1|QA|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.0829
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DFE|1|QA|G|963
5DFE|1|QA|A|964
5DFE|1|QA|A|965
5DFE|1|QA|M2G|966
5DFE|1|QA|5MC|967
5DFE|1|QA|A|968
5DFE|1|QA|A|969
5DFE|1|QA|C|970
5DFE|1|QA|G|971
5DFE|1|QA|C|972
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QI
- 30S ribosomal protein S9
- Chain QJ
- 30S ribosomal protein S10
- Chain QM
- 30S ribosomal protein S13
- Chain QN
- 30S ribosomal protein S14 type Z
- Chain QV
- Transfer RNA; tRNA
- Chain QY
- Peptide chain release factor 2
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