3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
5DFE|1|RA|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DFE_053 not in the Motif Atlas
Geometric match to HL_7RQB_018
Geometric discrepancy: 0.0469
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

5DFE|1|RA|U|566
5DFE|1|RA|A|567
5DFE|1|RA|U|568
5DFE|1|RA|U|569
5DFE|1|RA|G|570
5DFE|1|RA|A|571
5DFE|1|RA|A|572
5DFE|1|RA|G|573
5DFE|1|RA|C|574
5DFE|1|RA|A|575

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RP
50S ribosomal protein L15
Chain RV
50S ribosomal protein L21

Coloring options:


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