HL_5DFE_101

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5DFE|1|RA|G|2751, 5DFE|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_101 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.059

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5DFE|1|RA|C|2745
5DFE|1|RA|U|2746
5DFE|1|RA|G|2747
5DFE|1|RA|A|2748
5DFE|1|RA|A|2749
5DFE|1|RA|A|2750
5DFE|1|RA|G|2751
5DFE|1|RA|C|2752
5DFE|1|RA|A|2753
5DFE|1|RA|U|2754
5DFE|1|RA|C|2755
5DFE|1|RA|U|2756
5DFE|1|RA|A|2757
5DFE|1|RA|A|2758
5DFE|1|RA|G|2759

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6