HL_5DFE_186
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5DFE|1|YA|A|1780, 5DFE|1|YA|C|1781, 5DFE|1|YA|C|1782, 5DFE|1|YA|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_186 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0421
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5DFE|1|YA|U|1777
5DFE|1|YA|U|1778
5DFE|1|YA|U|1779
5DFE|1|YA|A|1780
5DFE|1|YA|C|1781
5DFE|1|YA|C|1782
5DFE|1|YA|A|1783
5DFE|1|YA|A|1784
5DFE|1|YA|A|1785
5DFE|1|YA|A|1786
5DFE|1|YA|A|1787
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YD
- 50S ribosomal protein L2
- Chain YW
- 50S ribosomal protein L22
Coloring options: