HL_5DGE_027

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5DGE|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.1403

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5DGE|1|1|C|1239
5DGE|1|1|A|1240
5DGE|1|1|U|1241
5DGE|1|1|G|1242
5DGE|1|1|G|1243
5DGE|1|1|A|1244
5DGE|1|1|A|1245
5DGE|1|1|G|1246
5DGE|1|1|U|1247
5DGE|1|1|C|1248
5DGE|1|1|G|1249

Current chains

Chain 1

25S ribosomal RNA

Nearby chains