HL_5DGE_221

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_221 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.2794

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

5DGE|1|6|A|1691
5DGE|1|6|G|1692
5DGE|1|6|A|1693
5DGE|1|6|A|1694
5DGE|1|6|G|1695
5DGE|1|6|G|1696
5DGE|1|6|G|1697
5DGE|1|6|G|1698
5DGE|1|6|G|1699
5DGE|1|6|C|1700
5DGE|1|6|A|1701
5DGE|1|6|A|1702
5DGE|1|6|C|1703
5DGE|1|6|U|1704
5DGE|1|6|C|1705
5DGE|1|6|C|1706
5DGE|1|6|A|1707
5DGE|1|6|U|1708
5DGE|1|6|C|1709
5DGE|1|6|U|1710

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A