HL_5DGE_228

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

5DGE|1|1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_228 not in the Motif Atlas

Homologous match to HL_8P9A_160

Geometric discrepancy: 0.1712

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DGE|1|1|A|2252
5DGE|1|1|G|2253
5DGE|1|1|U|2254
5DGE|1|1|A|2255
5DGE|1|1|A|2256
5DGE|1|1|C|2257
5DGE|1|1|U|2258
5DGE|1|1|A|2259
5DGE|1|1|U|2260
5DGE|1|1|G|2261
5DGE|1|1|A|2262
5DGE|1|1|C|2263
5DGE|1|1|U|2264

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain E0

40S ribosomal protein S30-A