HL_8P9A_160

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

8P9A|1|AR|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|A|2252
8P9A|1|AR|G|2253
8P9A|1|AR|U|2254
8P9A|1|AR|A|2255
8P9A|1|AR|A|2256
8P9A|1|AR|C|2257
8P9A|1|AR|U|2258
8P9A|1|AR|A|2259
8P9A|1|AR|U|2260
8P9A|1|AR|G|2261
8P9A|1|AR|A|2262
8P9A|1|AR|C|2263
8P9A|1|AR|U|2264

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA