HL_5DGF_092

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_092 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.28

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5DGF|1|2|A|829
5DGF|1|2|U|830
5DGF|1|2|U|831
5DGF|1|2|U|832
5DGF|1|2|U|833
5DGF|1|2|G|834
5DGF|1|2|U|835
5DGF|1|2|U|836
5DGF|1|2|G|837
5DGF|1|2|G|838
5DGF|1|2|U|839
5DGF|1|2|U|840
5DGF|1|2|U|841
5DGF|1|2|C|842
5DGF|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A