HL_5DGF_108

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

5DGF|1|2|G|1699, 5DGF|1|2|A|1702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_108 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.4492

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

5DGF|1|2|A|1691
5DGF|1|2|G|1692
5DGF|1|2|A|1693
5DGF|1|2|A|1694
5DGF|1|2|G|1695
5DGF|1|2|G|1696
5DGF|1|2|G|1697
5DGF|1|2|G|1698
5DGF|1|2|G|1699
5DGF|1|2|C|1700
5DGF|1|2|A|1701
5DGF|1|2|A|1702
5DGF|1|2|C|1703
5DGF|1|2|U|1704
5DGF|1|2|C|1705
5DGF|1|2|C|1706
5DGF|1|2|A|1707
5DGF|1|2|U|1708
5DGF|1|2|C|1709
5DGF|1|2|U|1710

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A