HL_5DGF_135

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

5DGF|1|5|U|879, 5DGF|1|5|A|883, 5DGF|1|5|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_135 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0837

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5DGF|1|5|A|876
5DGF|1|5|C|877
5DGF|1|5|G|878
5DGF|1|5|U|879
5DGF|1|5|G|880
5DGF|1|5|C|881
5DGF|1|5|A|882
5DGF|1|5|A|883
5DGF|1|5|A|884
5DGF|1|5|U|885

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain m7

60S ribosomal protein L17-A

Chain o7

60S ribosomal protein L37-A