HL_5DGV_091

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2494

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5DGV|1|2|A|829
5DGV|1|2|U|830
5DGV|1|2|U|831
5DGV|1|2|U|832
5DGV|1|2|U|833
5DGV|1|2|G|834
5DGV|1|2|U|835
5DGV|1|2|U|836
5DGV|1|2|G|837
5DGV|1|2|G|838
5DGV|1|2|U|839
5DGV|1|2|U|840
5DGV|1|2|U|841
5DGV|1|2|C|842
5DGV|1|2|U|843

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C1

40S ribosomal protein S11-A