HL_5DGV_191
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 5DGV|1|6|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_191 not in the Motif Atlas
- Homologous match to HL_4V88_191
- Geometric discrepancy: 0.1319
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5DGV|1|6|G|243
5DGV|1|6|A|244
5DGV|1|6|U|245
5DGV|1|6|G|246
5DGV|1|6|A|247
5DGV|1|6|U|248
5DGV|1|6|U|249
5DGV|1|6|C|250
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
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