HL_5DGV_216

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_216 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.2866

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DGV|1|6|C|1359
5DGV|1|6|A|1360
5DGV|1|6|U|1361
5DGV|1|6|U|1362
5DGV|1|6|U|1363
5DGV|1|6|G|1364

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5