HL_5DGV_236
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5DGV|1|4|C|84, 5DGV|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_236 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.1433
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DGV|1|4|U|69
5DGV|1|4|G|70
5DGV|1|4|A|71
5DGV|1|4|A|72
5DGV|1|4|U|73
5DGV|1|4|U|74
5DGV|1|4|G|75
5DGV|1|4|C|76
5DGV|1|4|A|77
5DGV|1|4|G|78
5DGV|1|4|A|79
5DGV|1|4|A|80
5DGV|1|4|U|81
5DGV|1|4|U|82
5DGV|1|4|C|83
5DGV|1|4|C|84
5DGV|1|4|G|85
5DGV|1|4|U|86
5DGV|1|4|G|87
5DGV|1|4|A|88
5DGV|1|4|A|89
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N6
- 60S ribosomal protein L26-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
- Chain n6
- 60S ribosomal protein L26-A
Coloring options: