HL_5DM6_001
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM6_001 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.1276
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5DM6|1|X|C|59
5DM6|1|X|G|60
5DM6|1|X|A|61
5DM6|1|X|U|62
5DM6|1|X|U|63
5DM6|1|X|A|64
5DM6|1|X|C|65
5DM6|1|X|C|66
5DM6|1|X|U|67
5DM6|1|X|G|68
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L29
Coloring options: