HL_5DM6_020

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_020 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.3443

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5DM6|1|X|C|640
5DM6|1|X|C|641
5DM6|1|X|G|642
5DM6|1|X|A|643
5DM6|1|X|A|644
5DM6|1|X|U|645
5DM6|1|X|A|646
5DM6|1|X|G|647

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15