HL_5DM6_028
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 5DM6|1|X|A|1070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM6_028 not in the Motif Atlas
- Homologous match to HL_6PRV_001
- Geometric discrepancy: 0.2196
- The information below is about HL_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DM6|1|X|C|1064
5DM6|1|X|U|1065
5DM6|1|X|U|1066
5DM6|1|X|A|1067
5DM6|1|X|G|1068
5DM6|1|X|A|1069
5DM6|1|X|A|1070
5DM6|1|X|G|1071
5DM6|1|X|C|1072
5DM6|1|X|A|1073
5DM6|1|X|G|1074
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L11
- Chain J
- 50S ribosomal protein L16
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