HL_5DM6_051

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUUUGGGG

Length

10 nucleotides

Bulged bases

5DM6|1|X|U|2144, 5DM6|1|X|U|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_051 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3526

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5DM6|1|X|C|2141
5DM6|1|X|C|2142
5DM6|1|X|U|2143
5DM6|1|X|U|2144
5DM6|1|X|U|2145
5DM6|1|X|U|2146
5DM6|1|X|G|2147
5DM6|1|X|G|2148
5DM6|1|X|G|2149
5DM6|1|X|G|2150

Current chains

Chain X

23S ribosomal RNA

Nearby chains