HL_5DM8_066

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5DM8|1|X|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_066 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.1327

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5DM8|1|X|C|2745
5DM8|1|X|U|2746
5DM8|1|X|G|2747
5DM8|1|X|A|2748
5DM8|1|X|A|2749
5DM8|1|X|A|2750
5DM8|1|X|G|2751
5DM8|1|X|C|2752
5DM8|1|X|A|2753
5DM8|1|X|U|2754
5DM8|1|X|C|2755
5DM8|1|X|U|2756
5DM8|1|X|A|2757
5DM8|1|X|A|2758
5DM8|1|X|G|2759

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13