HL_5DOX_077

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

5DOX|1|1a|U|202, 5DOX|1|1a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOX_077 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3903

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5DOX|1|1a|G|199
5DOX|1|1a|G|200
5DOX|1|1a|C|201
5DOX|1|1a|U|202
5DOX|1|1a|U|203
5DOX|1|1a|U|204
5DOX|1|1a|G|216
5DOX|1|1a|C|217
5DOX|1|1a|C|218

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains