HL_5DOY_157

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5DOY|1|2A|A|1780, 5DOY|1|2A|C|1781, 5DOY|1|2A|C|1782, 5DOY|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DOY_157 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0529

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5DOY|1|2A|U|1777
5DOY|1|2A|U|1778
5DOY|1|2A|U|1779
5DOY|1|2A|A|1780
5DOY|1|2A|C|1781
5DOY|1|2A|C|1782
5DOY|1|2A|A|1783
5DOY|1|2A|A|1784
5DOY|1|2A|A|1785
5DOY|1|2A|A|1786
5DOY|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S Ribosomal Protein L34

Chain 2D

50S Ribosomal Protein L2

Chain 2W

50S Ribosomal Protein L22