3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAUGCAAAC
Length
10 nucleotides
Bulged bases
5E7K|1|14|U|747, 5E7K|1|14|A|751, 5E7K|1|14|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5E7K_054 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.0692
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

5E7K|1|14|G|744
5E7K|1|14|G|745
5E7K|1|14|A|746
5E7K|1|14|U|747
5E7K|1|14|G|748
5E7K|1|14|C|749
5E7K|1|14|A|750
5E7K|1|14|A|751
5E7K|1|14|A|752
5E7K|1|14|C|753

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 29
50S ribosomal protein L3
Chain A5
50S ribosomal protein L22
Chain J5
50S ribosomal protein L32
Chain L5
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4106 s
Application loaded.