HL_5E81_004

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCCUUGGGG

Length

9 nucleotides

Bulged bases

5E81|1|13|U|189, 5E81|1|13|G|190, 5E81|1|13|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5E81_004 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3188

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

5E81|1|13|C|186|||E
5E81|1|13|C|186|||F
5E81|1|13|C|187
5E81|1|13|U|188
5E81|1|13|U|189
5E81|1|13|G|190
5E81|1|13|G|191
5E81|1|13|G|191|||A
5E81|1|13|G|191|||B

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20