3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
5EL4|1|14|A|1780, 5EL4|1|14|C|1781, 5EL4|1|14|C|1782, 5EL4|1|14|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5EL4_077 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.0493
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

5EL4|1|14|U|1777
5EL4|1|14|U|1778
5EL4|1|14|U|1779
5EL4|1|14|A|1780
5EL4|1|14|C|1781
5EL4|1|14|C|1782
5EL4|1|14|A|1783
5EL4|1|14|A|1784
5EL4|1|14|A|1785
5EL4|1|14|A|1786
5EL4|1|14|A|1787

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain A5
50S ribosomal protein L22
Chain L5
50S ribosomal protein L34

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