HL_5EL4_109

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5EL4|1|1G|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_109 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0667

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5EL4|1|1G|G|259
5EL4|1|1G|G|260
5EL4|1|1G|U|261
5EL4|1|1G|A|262
5EL4|1|1G|A|263
5EL4|1|1G|U|264
5EL4|1|1G|G|265
5EL4|1|1G|G|266
5EL4|1|1G|C|267

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 8A

30S ribosomal protein S17

Chain BA

30S ribosomal protein S20