HL_5EL4_202

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5EL4|1|1H|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL4_202 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0873

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5EL4|1|1H|C|2745
5EL4|1|1H|U|2746
5EL4|1|1H|G|2747
5EL4|1|1H|A|2748
5EL4|1|1H|A|2749
5EL4|1|1H|A|2750
5EL4|1|1H|G|2751
5EL4|1|1H|C|2752
5EL4|1|1H|A|2753
5EL4|1|1H|U|2754
5EL4|1|1H|C|2755
5EL4|1|1H|U|2756
5EL4|1|1H|A|2757
5EL4|1|1H|A|2758
5EL4|1|1H|G|2759

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13