HL_5EL4_219
3D structure
- PDB id
- 5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGACUUUUAAUCA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5EL4_219 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.3127
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5EL4|1|3K|U|29
5EL4|1|3K|G|30
5EL4|1|3K|A|31
5EL4|1|3K|C|32
5EL4|1|3K|U|33
5EL4|1|3K|U|34
5EL4|1|3K|U|35
5EL4|1|3K|U|36
5EL4|1|3K|A|37
5EL4|1|3K|A|38
5EL4|1|3K|U|39
5EL4|1|3K|C|40
5EL4|1|3K|A|41
Current chains
- Chain 3K
- tRNA-Lys
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2I
- 30S ribosomal protein S11
- Chain 2K
- Transfer RNA; tRNA
- Chain 4K
- mRNA
- Chain 6E
- 30S ribosomal protein S7
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