HL_5EL7_139

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5EL7|1|1H|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_139 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.0926

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5EL7|1|1H|G|194
5EL7|1|1H|A|195
5EL7|1|1H|A|196
5EL7|1|1H|A|197
5EL7|1|1H|C|198
5EL7|1|1H|A|199
5EL7|1|1H|U|200
5EL7|1|1H|C|201

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28