HL_5EL7_151

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

5EL7|1|1H|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_151 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0618

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5EL7|1|1H|U|566
5EL7|1|1H|A|567
5EL7|1|1H|U|568
5EL7|1|1H|U|569
5EL7|1|1H|G|570
5EL7|1|1H|A|571
5EL7|1|1H|A|572
5EL7|1|1H|G|573
5EL7|1|1H|C|574
5EL7|1|1H|A|575

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 78

50S ribosomal protein L15

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32