HL_5EL7_200

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5EL7|1|1H|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5EL7_200 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0872

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5EL7|1|1H|C|2745
5EL7|1|1H|U|2746
5EL7|1|1H|G|2747
5EL7|1|1H|A|2748
5EL7|1|1H|A|2749
5EL7|1|1H|A|2750
5EL7|1|1H|G|2751
5EL7|1|1H|C|2752
5EL7|1|1H|A|2753
5EL7|1|1H|U|2754
5EL7|1|1H|C|2755
5EL7|1|1H|U|2756
5EL7|1|1H|A|2757
5EL7|1|1H|A|2758
5EL7|1|1H|G|2759

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13