HL_5F8K_129
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 5F8K|1|2A|U|747, 5F8K|1|2A|A|751, 5F8K|1|2A|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5F8K_129 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.0671
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5F8K|1|2A|G|744
5F8K|1|2A|G|745
5F8K|1|2A|A|746
5F8K|1|2A|U|747
5F8K|1|2A|G|748
5F8K|1|2A|C|749
5F8K|1|2A|A|750
5F8K|1|2A|A|751
5F8K|1|2A|A|752
5F8K|1|2A|C|753
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 27
- 50S ribosomal protein L34
- Chain 2E
- 50S ribosomal protein L3
- Chain 2W
- 50S ribosomal protein L22
- Chain 2y
- Cathelicidin-3
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